Multidimensional single-cell analysis of human peripheral blood reveals characteristic features of the immune system landscape in aging and frailty

Basic information
Cell
137,214
Sample
17

Technology
10X Genomics
Omics
scRNA-seq
Source
PBMCs,umbilical cord blood

Dataset ID
37117750
Platform
Illumina NovaSeq 6000
Species
Human
Disease
Frailty,Healthy
Age range
23 - 100
Update date
2022-04-18
Summary

Frailty is an intermediate status of the human aging process, associated with decompensated homeostasis and death. The immune phenotype of frailty and its underlying cellular and molecular processes remain poorly understood. We profiled 114,467 immune cells from cord blood, young adults and healthy and frail old adults using single-cell RNA and TCR sequencing. Here we show an age-dependent accumulation of transcriptome heterogeneity and variability in immune cells. Characteristic transcription factors were identified in given cell types of specific age groups. Trajectory analysis revealed cells from non-frail and frail old adults often fall into distinct paths. Numerous TCR clonotypes were shared among T-cell subtypes in old adults, indicating differential pluripotency and resilience capabilities of aged T cells. A frailty-specific monocyte subset was identified with exclusively high expression of long noncoding RNAs NEAT1 and MALAT1. Our study discovers human frailty-specific immune cell characteristics based on the comprehensive dimensions in the immune landscape of aging and frailty.

Overall design

Three cord blood samples, PBMC samples from 3 healthy young, 6 healthy old and 5 frail donors were used for single-cell RNA, TCR and cell surface protein (CCR7, CD45RA, CD4 and CD8) antibody barcoded sequencing to create a single-cell transcriptome and TCR atlas from newborns to frailty.

Contributors

To be supplemented.

Contact

To be supplemented.

snRNA-Seq
Sample nameSample titleDiseaseGenderAgeSourceTreatmentTechnologyPlatformOmicsSample IDDataset IDAction
No data available