Arabidopsis Transcriptome
Source: NCBI BioProject (ID PRJNA90333)

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Project name: Arabidopsis thaliana
Description: Sample groupings for this project are as follows:Cauline leaf vs Cultured Cell :- Cauline leaf, p1; Exp:Red; Ref: Green (Cy5:Cy3)- Cauline leaf, p2; Exp:Red; Ref: Green (Cy5:Cy3)- Cauline leaf, p3; Exp:Red; Ref: Green (Cy5:Cy3)Cotyledon light vs Cotyledon dark :- Cotyledon, CP1; Exp:Red; Ref: Green (Cy5:Cy3)- Cotyledon, CP2; Exp:Red; Ref: Green (Cy5:Cy3)Cotyledon light vs Cultured cell :- Cotyledon, cn1; Exp:Green; Ref: Red (Cy3:Cy5)- Cotyledon, cn2; Exp:Green; Ref: Red (Cy3:Cy5)Cotyledon dark vs Cultured cell :- Cotyledon dark, n1; Exp:Green; Ref: Red (Cy3:Cy5)- Cotyledon dark, n2; Exp:Green; Ref: Red (Cy3:Cy5)- Cotyledon dark, n3; Exp:Green; Ref: Red (Cy3:Cy5)Germinating seed vs Cultured cell :- Germinating seed, gn1; Exp:Green; Ref: Red (Cy3:Cy5)- Germinating seed, gn2; Exp:Green; Ref: Red (Cy3:Cy5)- Germinating seed, gn3; Exp:Green; Ref: Red (Cy3:Cy5)Hypocotyl light vs Hypocotyl dark :- Hypocotyl, hldn1; Exp:Red; Ref: Green (Cy5:Cy3)- Hypocotyl, hldn2; Exp:Red; Ref: Green (Cy5:Cy3)Hypocotyl light vs Cultured cell :- Hypocotyl light, hln1; Exp:Green; Ref: Red (Cy3:Cy5)- Hypocotyl light, hln2; Exp:Green; Ref: Red (Cy3:Cy5)Petal vs Cultured cell :- Petal, pn1; Exp:Green; Ref: Red (Cy3:Cy5)- Petal, pn2; Exp:Green; Ref: Red (Cy3:Cy5)- Petal, pn3; Exp:Green; Ref: Red (Cy3:Cy5)1DBP vs Cultured cell :- Pistil 1DBP, pin1; Exp:Green; Ref: Red (Cy3:Cy5)- Pistil 1DBP, pin2; Exp:Green; Ref: Red (Cy3:Cy5)- Pistil 1DBP, pin3; Exp:Green; Ref: Red (Cy3:Cy5)Pistil 1DPP vs Cultured cell :- Pistil 1DPP, psn1; Exp:Green; Ref: Red (Cy3:Cy5)- Pistil 1DPP, psn2; Exp:Green; Ref: Red (Cy3:Cy5)- Pistil 1DPP, psn3; Exp:Green; Ref: Red (Cy3:Cy5)- Pistil 1DPP, psn4; Exp:Green; Ref: Red (Cy3:Cy5)Root dark vs Cultured cell :- Root dark, rdn1; Exp:Green; Ref: Red (Cy3:Cy5)- Root dark, rdn2; Exp:Green; Ref: Red (Cy3:Cy5)Root light vs Cultured cell :- Root light, rln1; Exp:Green; Ref: Red (Cy3:Cy5)- Root light, rlp1; Exp:Red; Ref: Green (Cy5:Cy3)Root light vs Root dark :- Root light vs dark, rldp1; Exp:Red; Ref: Green (Cy5:Cy3)- Root light vs dark, rldp2; Exp:Red; Ref: Green (Cy5:Cy3)Rosette leaf vs Cultured cell :- Rosette leaf, rfp1; Exp:Red; Ref: Green (Cy5:Cy3)- Rosette leaf, rfp2; Exp:Red; Ref: Green (Cy5:Cy3)- Rosette leaf, rfp3; Exp:Red; Ref: Green (Cy5:Cy3)Sepal vs Cultured cell :- Sepal, sn1; Exp:Green; Ref: Red (Cy3:Cy5)- Sepal, sn2; Exp:Green; Ref: Red (Cy3:Cy5)Silique 3DPP vs Cultured cell :- Silique 3DPP, s3n1; Exp:Green; Ref: Red (Cy3:Cy5)- Silique 3DPP, s3n2; Exp:Green; Ref: Red (Cy3:Cy5)- Silique 3DPP, s3n3; Exp:Green; Ref: Red (Cy3:Cy5)Silique 8DPP vs Cultured cell :- Silique 8DPP, s8n1; Exp:Green; Ref: Red (Cy3:Cy5)- Silique 8DPP, s8n2; Exp:Green; Ref: Red (Cy3:Cy5)- Silique 8DPP, s8n3; Exp:Green; Ref: Red (Cy3:Cy5)Stamen vs Cultured cell :- Stamen, smn1; Exp:Green; Ref: Red (Cy3:Cy5)- Stamen, smn2; Exp:Green; Ref: Red (Cy3:Cy5)- Stamen, smn3; Exp:Green; Ref: Red (Cy3:Cy5)Hypocotyl dark vs Cultured cell :- Hypocotyl dark, hn1; Exp:Green; Ref: Red (Cy3:Cy5)- Hypocotyl dark, hn2; Exp:Green; Ref: Red (Cy3:Cy5)Stem vs Cultured cell :- Stem, stp1; Exp:Red; Ref: Green (Cy5:Cy3)- Stem, stp2; Exp:Red; Ref: Green (Cy5:Cy3)- Stem, stp3; Exp:Red; Ref: Green (Cy5:Cy3)Keywords: other
Data type: Transcriptome or Gene expression
Sample scope: Multiisolate
Relevance: ModelOrganism
Organization: Deng Lab, Molecular, Cellular & Developmental Biology, Yale University
Literatures
  1. PMID: 15888681
Release date: 2004-10-24
Last updated: 2004-07-26