Project name: Oncidium hybrid cultivar

Description: Oncidium cDNA libraries for six different organs, including leaves, pseudobulbs,young inflorescences, inflorescences, flower buds and mature flowers were generated. 454-pyrosequencing technology was utilized to perform high-throughput deep sequencing of the Oncidium transcriptome, yielding more than 0.9 million readswith an average length of 328 bp, for a total of 301 million bases. De novoassembly of the sequences yielded 50,908 contig sequences with an averagelength of 493 bp from 796,463 reads and 120,219 singletons. The assembledsequences were annotated using BLAST, and a total of 12,757 and 13,931UniGene transcripts from the Arabidopsis and rice genomes were matched byTBLASTX, respectively.

Data type: Transcriptome or Gene expression

Sample scope: Monoisolate

Last updated: 2011-06-13