Description: Antimicrobial resistance (AMR) and pathogens derived from food animals and their associated environments have emerged as a daunting threat to humans from One Health perspectives, but our understanding of these risks and their key prevention and control point in current increasing intensive breeding industry remains poor. By creating an integral composition and risk profile of resistome and microbiome via metagenomics in feces, flies, dust, sewage, and soil along the four-stage laying hen production chain, we found that the whole production chain was a hotspot for antimicrobial resistance gene (ARG) and pathogens, and feces and flies as major risk sources shaped these contaminations.

Data type: Raw sequence reads; Metagenome

Sample scope: Environment

Release date: 2023-07-01

Last updated: 2022-09-14

Data size: 409.01GB