Codeplot is a computing-platform providing trusted execution environment for bio-informatics analysis. It incorporates the cutting-edge technologies including object storage, secure gene container, blockchain et al. to ensure the security of data sharing and computation in life science.
To facilitate the analysis and sharing of single-cell transcriptome sequencing datasets, single-cell workspace was implemented to manage relevant datasets and perform comprehensive bioinformatics analysis as well as visualization based on the expression matrix datasets archived in CNSA. This single-cell analyzing workflow is developed based on the software scanpy(https://scanpy.readthedocs.io). Users are only required to provide a single cell expression matrix (csv/tsv). Sufficient optional adjustment parameters will be given to support user-defined parameters. Each step produces hdf5 file as input for the next step. We also provide each step as a workflow for users to debug.