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SNPs (single nucleotide polymorphisms)

Please enter a gene symbol or a chromosome location to obtain a SNP information and allele frequency distribution pattern in 17 world-wide bread wheat or five ploidy wheat groups.

Genome version

 IWGSC RefSeq v1.0  IWGSC RefSeq v2.0

Basic search

Gene symbol:  e.g.,

Or Chromosome location:  e.g.,

Advanced search

Minor allele frequency    (range: 0-1)

Consequence type:

Transcript variant
  • Coding variant
    • Missense_variant
    • Initiator_codon_variant
    • Start_lost
    • Stop_lost
    • Stop_gained
    • Stop_retained_variant
    • Synonymous_variant
  • Non-coding variant
    • 5_prime_UTR_variant
    • 5_prime_UTR_premature_start_codon_gain_variant
    • 3_prime_UTR_variant
    • Intron_variant
  • Splice variant
    • Splice_acceptor_variant
    • Splice_donor_variant
    • Splice_region_variant
Intergenic variant
  • Upstream_gene_variant
  • Downstream_gene_variant
  • Intergenic_variant