Taxonomy: Cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys; Trachemys scripta,
Latin Name:
Trachemys scripta elegans
Tested tissues: Pallium,
Project | Date | Technology | Tissue | Condition | Cell | PMID/DOI |
---|---|---|---|---|---|---|
Vthunter_110083 | 2018.05 | Drop-seq | Pallium | Normal | 18828 | Link |
Virus | Virus Name | GeneTop 5 cell types expressing viral receptor ordered by expression proportion |
---|---|---|
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Dengue virus | |
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Adeno-associated virus - 2 |
Pallium-tsLeuB : 97.22% ; Pallium-tsLeuT : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; Pallium-tsOPC : 35.45% ; Pallium-tsEG : 34.57% ; Pallium-tsOlig : 33.55% ; Pallium-tsLeuB : 25.00% ; Pallium-tsNPCs : 23.29% ; Pallium-tsExc5 : 23.49% ; Pallium-tsExc1 : 23.09% ; Pallium-tsOlig : 18.71% ; Pallium-tsExc2 : 18.39% ; Pallium-tsExc3 : 17.58% ; |
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Adeno-associated virus - 3 |
Pallium-tsLeuB : 97.22% ; Pallium-tsLeuT : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; |
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Adeno-associated virus 9 |
Pallium-tsLeuB : 97.22% ; Pallium-tsLeuT : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; |
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Adeno-associated virus - 8 |
Pallium-tsLeuB : 97.22% ; Pallium-tsLeuT : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; |
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Venezuelan equine encephalitis virus |
Pallium-tsLeuB : 97.22% ; Pallium-tsLeuT : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; |
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Sindbis virus |
Pallium-tsLeuB : 97.22% ; Pallium-tsLeuT : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; |
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Classical swine fever virus |
Pallium-tsLeuT : 97.22% ; Pallium-tsLeuB : 97.22% ; Pallium-tsMG : 90.32% ; Pallium-tsExc1 : 84.96% ; Pallium-tsNPCs : 81.73% ; |
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Simian rotavirus A strain RRV |
Pallium-tsExc1 : 95.13% ; Pallium-tsExc3 : 93.42% ; Pallium-tsExc4 : 93.19% ; Pallium-tsExc5 : 92.44% ; Pallium-tsExc2 : 92.36% ; Pallium-tsOPC : 35.45% ; Pallium-tsEG : 34.57% ; Pallium-tsOlig : 33.55% ; Pallium-tsLeuB : 25.00% ; Pallium-tsNPCs : 23.29% ; Pallium-tsEG : 26.90% ; Pallium-tsLeuB : 19.44% ; Pallium-tsLeuT : 11.11% ; Pallium-tsMG : 9.85% ; |
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Hepacivirus C |
Pallium-tsExc4 : 93.49% ; Pallium-tsExc3 : 92.95% ; Pallium-tsExc1 : 91.31% ; Pallium-tsExc5 : 88.55% ; Pallium-tsEG : 84.17% ; Pallium-tsMur : 35.09% ; Pallium-doublets : 12.80% ; Pallium-tsEG : 20.92% ; Pallium-tsMG : 19.52% ; Pallium-tsLeuB : 19.44% ; Pallium-tsOlig : 14.19% ; Pallium-doublets : 13.41% ; Pallium-tsLeuT : 11.11% ; Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; Pallium-tsExc3 : 9.68% ; Pallium-tsExc1 : 11.44% ; |
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Human papillomavirus type 16 | |
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Porcine reproductive and respiratory syndrome virus |
Pallium-tsOlig : 87.74% ; Pallium-tsEG : 33.67% ; Pallium-tsExc2 : 27.18% ; Pallium-tsInh2 : 21.84% ; Pallium-tsExc1 : 21.82% ; |
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Rabies lyssavirus |
Pallium-tsExc2 : 85.63% ; Pallium-tsExc3 : 84.68% ; Pallium-tsExc4 : 79.99% ; Pallium-tsInh2 : 79.52% ; Pallium-tsExc5 : 79.34% ; Pallium-tsExc1 : 42.37% ; Pallium-tsExc3 : 30.36% ; Pallium-tsExc5 : 19.83% ; Pallium-tsExc4 : 18.09% ; Pallium-tsInh2 : 22.44% ; Pallium-tsMur : 12.28% ; |
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Bovine leukemia virus |
Pallium-tsExc1 : 81.99% ; Pallium-tsExc5 : 74.91% ; Pallium-tsExc4 : 72.22% ; Pallium-tsExc3 : 71.62% ; Pallium-tsExc2 : 69.95% ; |
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Chikungunya virus | |
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Enterovirus A71 |
Pallium-tsOlig : 71.61% ; Pallium-tsExc2 : 25.62% ; Pallium-tsExc5 : 23.73% ; Pallium-tsInh2 : 23.49% ; Pallium-tsEG : 21.65% ; |
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Coxsackievirus A16 |
Pallium-tsOlig : 71.61% ; Pallium-tsExc2 : 25.62% ; Pallium-tsExc5 : 23.73% ; Pallium-tsInh2 : 23.49% ; Pallium-tsEG : 21.65% ; |
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Human immunodeficiency virus 2 | |
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Human immunodeficiency virus 1 | |
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Feline immunodeficiency virus |
Pallium-tsEG : 63.74% ; Pallium-tsLeuB : 38.89% ; Pallium-tsLeuT : 22.22% ; Pallium-doublets : 17.07% ; Pallium-tsOPC : 11.55% ; |
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Influenza A virus |
Pallium-tsExc1 : 59.11% ; Pallium-tsOlig : 56.13% ; Pallium-tsMur : 50.88% ; Pallium-tsExc5 : 46.81% ; Pallium-tsExc3 : 42.76% ; Pallium-tsExc3 : 43.98% ; Pallium-tsExc1 : 43.86% ; Pallium-tsExc2 : 40.23% ; Pallium-tsExc4 : 38.88% ; Pallium-tsExc5 : 36.95% ; Pallium-tsMur : 35.09% ; Pallium-doublets : 12.80% ; Pallium-tsExc1 : 32.63% ; Pallium-tsExc5 : 27.10% ; Pallium-tsExc4 : 25.49% ; Pallium-tsExc3 : 25.09% ; Pallium-tsExc2 : 21.84% ; |
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Ebola virus |
Pallium-tsExc1 : 58.47% ; Pallium-tsExc4 : 46.24% ; Pallium-tsExc5 : 41.97% ; Pallium-tsExc3 : 36.75% ; Pallium-tsEG : 29.12% ; |
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Zika virus |
Pallium-tsExc1 : 58.47% ; Pallium-tsExc4 : 46.24% ; Pallium-tsExc5 : 41.97% ; Pallium-tsExc3 : 36.75% ; Pallium-tsEG : 29.12% ; |
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Lassa mammarenavirus |
Pallium-tsExc1 : 58.47% ; Pallium-tsExc4 : 46.24% ; Pallium-tsExc5 : 41.97% ; Pallium-tsExc3 : 36.75% ; Pallium-tsEG : 29.12% ; Pallium-tsOlig : 56.77% ; Pallium-tsExc1 : 50.00% ; Pallium-tsExc5 : 41.74% ; Pallium-tsExc4 : 38.18% ; Pallium-tsExc3 : 38.06% ; Pallium-tsEG : 21.31% ; Pallium-tsExc1 : 20.13% ; Pallium-tsExc5 : 15.11% ; Pallium-tsExc2 : 13.46% ; Pallium-tsExc4 : 12.65% ; |
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Lymphocytic choriomeningitis mammarenavirus | |
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Marburg marburgvirus |
Pallium-tsExc1 : 58.47% ; Pallium-tsExc4 : 46.24% ; Pallium-tsExc5 : 41.97% ; Pallium-tsExc3 : 36.75% ; Pallium-tsEG : 29.12% ; |
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Hendra henipavirus | |
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Nipah henipavirus | |
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Foot-and-mouth disease virus | |
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Human alphaherpesvirus 1 | |
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Simian sarcoma-associated virus |
Pallium-tsEG : 54.94% ; Pallium-tsExc2 : 22.99% ; Pallium-doublets : 20.12% ; Pallium-tsExc5 : 19.72% ; Pallium-tsExc3 : 18.42% ; |
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Gibbon ape leukemia virus | |
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Feline leukemia virus strain B/lambda-B1 | |
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Mammalian orthoreovirus | |
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Severe acute respiratory syndrome coronavirus 2 | |
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Feline leukemia virus strain C/FA27 |
Pallium-tsExc2 : 40.56% ; Pallium-tsExc5 : 37.78% ; Pallium-tsExc1 : 35.59% ; Pallium-tsInh2 : 35.09% ; Pallium-tsExc4 : 34.41% ; |
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Ross River virus |
Pallium-tsMur : 40.35% ; Pallium-doublets : 11.59% ; |
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Onyong-nyong virus |
Pallium-tsMur : 40.35% ; Pallium-doublets : 11.59% ; |
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Mayaro virus |
Pallium-tsMur : 40.35% ; Pallium-doublets : 11.59% ; |
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Human metapneumovirus |
Pallium-tsOPC : 35.45% ; Pallium-tsEG : 34.57% ; Pallium-tsOlig : 33.55% ; Pallium-tsLeuB : 25.00% ; Pallium-tsNPCs : 23.29% ; |
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Equid alphaherpesvirus 1 | |
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Human betaherpesvirus 5 | |
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Human gammaherpesvirus 4 |
Pallium-tsOPC : 35.45% ; Pallium-tsEG : 34.57% ; Pallium-tsOlig : 33.55% ; Pallium-tsLeuB : 25.00% ; Pallium-tsNPCs : 23.29% ; |
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Human rotavirus strain WA | |
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Human parvovirus B19 |
Pallium-tsOPC : 35.45% ; Pallium-tsEG : 34.57% ; Pallium-tsOlig : 33.55% ; Pallium-tsLeuB : 25.00% ; Pallium-tsNPCs : 23.29% ; |
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Echovirus E1 | |
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Echovirus E8 | |
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Human mastadenovirus A |
Pallium-tsNPCs : 34.31% ; |
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Human mastadenovirus E |
Pallium-tsNPCs : 34.31% ; |
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Human mastadenovirus C | |
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Human mastadenovirus D |
Pallium-tsNPCs : 34.31% ; |
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Human mastadenovirus F |
Pallium-tsNPCs : 34.31% ; |
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Coxsackievirus B6 |
Pallium-tsNPCs : 34.31% ; |
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Coxsackievirus B2 |
Pallium-tsNPCs : 34.31% ; |
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Coxsackievirus B4 |
Pallium-tsNPCs : 34.31% ; |
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Coxsackievirus B3 |
Pallium-tsNPCs : 34.31% ; |
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Coxsackievirus B1 |
Pallium-tsNPCs : 34.31% ; |
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Coxsackievirus B5 |
Pallium-tsNPCs : 34.31% ; |
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Vesicular stomatitis virus | |
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Human alphaherpesvirus 3 |
Pallium-tsExc1 : 31.99% ; Pallium-tsExc5 : 26.21% ; Pallium-tsExc4 : 24.16% ; Pallium-tsExc2 : 21.43% ; Pallium-tsExc3 : 20.02% ; |
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Varicella Zoster Virus |
Pallium-tsExc1 : 31.99% ; Pallium-tsExc5 : 26.21% ; Pallium-tsExc4 : 24.16% ; Pallium-tsExc2 : 21.43% ; Pallium-tsExc3 : 20.02% ; |
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Middle East respiratory syndrome-related coronavirus |
Pallium-tsExc2 : 28.08% ; Pallium-tsExc3 : 25.47% ; Pallium-tsExc5 : 24.79% ; Pallium-tsExc1 : 23.31% ; Pallium-tsInh2 : 21.08% ; |
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Amphotropic murine leukemia virus |
Pallium-tsExc5 : 27.80% ; Pallium-tsInh2 : 26.81% ; Pallium-tsExc1 : 25.00% ; Pallium-tsExc4 : 22.94% ; Pallium-tsExc2 : 22.41% ; |
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Xenotropic murine leukemia virus |
Pallium-tsExc2 : 22.91% ; Pallium-tsExc1 : 21.40% ; Pallium-tsExc5 : 20.07% ; Pallium-tsExc3 : 19.08% ; Pallium-tsInh2 : 18.52% ; |
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Polytropic murine leukemia virus |
Pallium-tsExc2 : 22.91% ; Pallium-tsExc1 : 21.40% ; Pallium-tsExc5 : 20.07% ; Pallium-tsExc3 : 19.08% ; Pallium-tsInh2 : 18.52% ; |
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Ecotropic murine leukemia virus |
Pallium-tsExc1 : 22.03% ; Pallium-tsExc3 : 19.74% ; Pallium-tsExc2 : 19.70% ; Pallium-tsExc5 : 18.89% ; Pallium-tsExc4 : 17.80% ; |
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Oliveros mammarenavirus |
Pallium-tsEG : 21.31% ; Pallium-tsExc1 : 20.13% ; Pallium-tsExc5 : 15.11% ; Pallium-tsExc2 : 13.46% ; Pallium-tsExc4 : 12.65% ; |
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Latino mammarenavirus |
Pallium-tsEG : 21.31% ; Pallium-tsExc1 : 20.13% ; Pallium-tsExc5 : 15.11% ; Pallium-tsExc2 : 13.46% ; Pallium-tsExc4 : 12.65% ; |
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Human alphaherpesvirus 2 |
Pallium-tsOlig : 20.00% ; Pallium-tsExc3 : 12.22% ; Pallium-tsExc1 : 12.08% ; Pallium-tsExc2 : 11.74% ; Pallium-doublets : 10.98% ; |
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Human rhinovirus A2 |
Pallium-tsMG : 19.52% ; Pallium-tsLeuB : 19.44% ; Pallium-tsOlig : 14.19% ; Pallium-doublets : 13.41% ; Pallium-tsLeuT : 11.11% ; |
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Human gammaherpesvirus 8 |
Pallium-tsOlig : 15.48% ; |
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Canine parvovirus |
Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; |
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Feline panleukopenia virus |
Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; Pallium-tsExc3 : 9.68% ; |
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Machupo mammarenavirus |
Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; |
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Argentinian mammarenavirus |
Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; |
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Guanarito mammarenavirus |
Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; |
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Canine morbillivirus |
Pallium-tsLeuT : 13.89% ; |
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Mouse mammary tumor virus |
Pallium-tsLeuB : 13.89% ; Pallium-tsExc1 : 11.02% ; Pallium-tsExc5 : 10.09% ; Pallium-tsExc3 : 9.68% ; |
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Rinderpest morbillivirus |
Pallium-tsLeuT : 13.89% ; |
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Measles morbillivirus |
Pallium-tsLeuT : 13.89% ; |
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Phocine morbillivirus |
Pallium-tsLeuT : 13.89% ; |
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Feline endogenous virus RD114 |
Pallium-tsExc1 : 12.71% ; Pallium-tsExc5 : 12.22% ; Pallium-tsExc3 : 10.53% ; Pallium-tsExc2 : 9.93% ; |
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Baboon endogenous virus strain M7 |
Pallium-tsExc1 : 12.71% ; Pallium-tsExc5 : 12.22% ; Pallium-tsExc3 : 10.53% ; Pallium-tsExc2 : 9.93% ; |
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Simian type D retrovirus -Tsukuba |
Pallium-tsExc1 : 12.71% ; Pallium-tsExc5 : 12.22% ; Pallium-tsExc3 : 10.53% ; Pallium-tsExc2 : 9.93% ; |
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Simian immunodeficiency virus |
Pallium-tsLeuT : 11.11% ; |
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Human betaherpesvirus 7 |
Pallium-tsLeuT : 11.11% ; |
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Japanese encephalitis virus |
Pallium-tsLeuB : 11.11% ; |
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Hepatitis E virus |
Pallium-tsExc4 : 10.25% ; Pallium-tsExc5 : 9.74% ; |