Taxonomy: Cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae,
Latin Name:
Rattus norvegicus
Tested tissues: Lung, UrogenitalSinus, TotalBrain,
Project | Date | Technology | Tissue | Condition | Cell | PMID/DOI |
---|---|---|---|---|---|---|
Vthunter_1001 | 2019.12 | 10X Genomics | Lung | Normal | 5029 | Link |
Vthunter_1002 | 2019.12 | 10X Genomics | Lung | Normal | 5924 | Link |
Vthunter_1009 | 2017.11 | Fluidigm C1 | UrogenitalSinus | Normal | 114 | Link |
Vthunter_110073 | 2019.12 | MARS-seq | TotalBrain | Normal | 2304 | Link |
Virus | Virus Name | GeneTop 5 cell types expressing viral receptor ordered by expression proportion |
---|---|---|
Dengue virus |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; Lung-Mac_alv : 91.15% ; Lung-Mac_alv : 83.73% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; |
|
Echovirus E1 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; |
|
Echovirus E8 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; |
|
Hepacivirus C | ||
Sindbis virus |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; |
|
Influenza A virus |
UrogenitalSinus-ventral mesenchymal pad : 100.00% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 98.48% ; Lung-Mac_alv : 97.30% ; Lung-ATI : 91.16% ; Lung-Mac_alv : 91.11% ; Lung-DC_CD209+ : 100.00% ; Lung-DC_CD209+ : 86.84% ; Lung-Secretory : 78.65% ; Lung-Meso : 76.47% ; Lung-Meso : 74.14% ; |
|
Nipah henipavirus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 95.92% ; |
|
Hendra henipavirus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 95.92% ; |
|
Human parvovirus B19 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 66.67% ; |
|
Human metapneumovirus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 66.67% ; |
|
Human betaherpesvirus 5 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; |
|
Mammalian orthoreovirus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; Lung-Mac_alv : 88.31% ; Lung-ATI : 83.74% ; Lung-Mac_alv : 81.78% ; Lung-Meso : 80.39% ; Lung-Secretory : 79.78% ; |
|
Adeno-associated virus 9 |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; |
|
Equid alphaherpesvirus 1 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 90.91% ; Lung-Mo_Ly6c- : 69.73% ; Lung-Mo_Ly6c- : 66.25% ; Lung-T_CD8+ : 65.38% ; Lung-T_CD8+ : 64.86% ; |
|
Human gammaherpesvirus 4 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 69.70% ; |
|
Human rotavirus strain WA |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; Lung-Mac_alv : 88.31% ; Lung-ATI : 83.74% ; Lung-Mac_alv : 81.78% ; Lung-Meso : 80.39% ; Lung-Secretory : 79.78% ; |
|
Adeno-associated virus - 2 |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 66.67% ; |
|
Adeno-associated virus - 3 |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; |
|
Adeno-associated virus - 8 |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; |
|
Vesicular stomatitis virus |
Lung-DC_CD209+ : 100.00% ; Lung-DC_CD209+ : 86.84% ; Lung-Secretory : 78.65% ; Lung-Meso : 76.47% ; Lung-Meso : 74.14% ; |
|
Classical swine fever virus |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; |
|
Foot-and-mouth disease virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; Lung-Secretory : 70.30% ; Lung-ATI : 68.76% ; Lung-Secretory : 65.17% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 66.67% ; |
|
Simian rotavirus A strain RRV |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 100.00% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; Lung-Mac_alv : 87.26% ; Lung-Secretory : 82.02% ; Lung-SMCs : 81.11% ; Lung-Mac_alv : 96.55% ; Lung-ATII : 95.37% ; Lung-Secretory : 93.26% ; Lung-ATII : 92.00% ; Lung-DC_CD209+ : 89.47% ; Lung-Mac_alv : 88.31% ; Lung-ATI : 83.74% ; Lung-Mac_alv : 81.78% ; Lung-Meso : 80.39% ; Lung-Secretory : 79.78% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; |
|
Venezuelan equine encephalitis virus |
Lung-Mo_Ly6c+ : 100.00% ; Lung-DC_Ccl17+ : 98.52% ; Lung-DC_Ccl17+ : 98.51% ; Lung-Innate_lymphoid : 98.28% ; Lung-Mac_alv : 97.90% ; |
|
Human mastadenovirus B |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 98.48% ; UrogenitalSinus-ventral mesenchymal pad : 97.96% ; |
|
Lassa mammarenavirus |
Lung-Mac_alv : 97.60% ; Lung-DC_CD209+ : 97.50% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 95.45% ; Lung-DC_CD209+ : 92.11% ; Lung-Mac_alv : 91.87% ; Lung-Mac_alv : 91.15% ; Lung-Mac_alv : 83.73% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 78.79% ; |
|
Enterovirus B |
Lung-Mac_alv : 97.15% ; Lung-Mac_alv : 90.51% ; Lung-Secretory : 84.27% ; Lung-DC_Ccl17+ : 83.58% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; |
|
Rabies lyssavirus |
UrogenitalSinus-ventral mesenchymal pad : 95.92% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 86.36% ; |
|
Japanese encephalitis virus |
Lung-EC_vasc : 94.41% ; Lung-EC_Vcam1+ : 90.00% ; Lung-EC_vasc : 83.88% ; Lung-EC_Vcam1+ : 83.53% ; Lung-EC_lymph : 75.00% ; |
|
Gibbon ape leukemia virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 92.42% ; Lung-Mac_alv : 71.06% ; |
|
Simian sarcoma-associated virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 92.42% ; Lung-Mac_alv : 71.06% ; |
|
Feline leukemia virus strain B/lambda-B1 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 92.42% ; Lung-Mac_alv : 71.06% ; |
|
Zika virus |
Lung-Mac_alv : 91.15% ; Lung-Mac_alv : 83.73% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; |
|
Ebola virus |
Lung-Mac_alv : 91.15% ; Lung-Mac_alv : 83.73% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; |
|
Marburg marburgvirus |
Lung-Mac_alv : 91.15% ; Lung-Mac_alv : 83.73% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; |
|
Lymphocytic choriomeningitis mammarenavirus | ||
Severe acute respiratory syndrome coronavirus 2 |
Lung-Mac_alv : 91.15% ; Lung-Mac_alv : 83.73% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 81.82% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; Lung-EC_cap : 88.89% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 84.85% ; Lung-EC_cap : 80.12% ; |
|
Mayaro virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 90.91% ; Lung-Fib_Col13a1+ : 86.96% ; Lung-Meso : 84.48% ; Lung-Meso : 80.39% ; Lung-Fib_Col14a1+ : 77.70% ; |
|
Ross River virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 90.91% ; Lung-Fib_Col13a1+ : 86.96% ; Lung-Meso : 84.48% ; Lung-Meso : 80.39% ; Lung-Fib_Col14a1+ : 77.70% ; |
|
Chikungunya virus | ||
Onyong-nyong virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 90.91% ; Lung-Fib_Col13a1+ : 86.96% ; Lung-Meso : 84.48% ; Lung-Meso : 80.39% ; Lung-Fib_Col14a1+ : 77.70% ; |
|
Feline calicivirus |
Lung-Mac_alv : 88.31% ; Lung-ATI : 83.74% ; Lung-Mac_alv : 81.78% ; Lung-Meso : 80.39% ; Lung-Secretory : 79.78% ; |
|
Rhinovirus B14 |
Lung-ATI : 87.87% ; Lung-ATI : 86.16% ; Lung-EC_Vcam1+ : 82.35% ; Lung-Mac_inter : 77.33% ; Lung-Mac_alv : 76.01% ; |
|
Coxsackievirus A21 | ||
Suid alphaherpesvirus 1 |
Lung-EC_lymph : 87.50% ; Lung-Secretory : 85.39% ; Lung-Secretory : 70.30% ; Lung-EC_lymph : 66.67% ; |
|
Human alphaherpesvirus 1 | ||
Human alphaherpesvirus 2 |
Lung-EC_lymph : 87.50% ; Lung-Secretory : 85.39% ; Lung-Secretory : 70.30% ; Lung-EC_lymph : 66.67% ; |
|
Human papillomavirus type 16 |
Lung-Meso : 82.76% ; Lung-Meso : 82.35% ; |
|
Porcine reproductive and respiratory syndrome virus |
Lung-Meso : 82.76% ; Lung-Meso : 82.35% ; |
|
Middle East respiratory syndrome-related coronavirus |
Lung-Meso : 82.35% ; Lung-Meso : 79.31% ; Lung-EC_cap : 79.17% ; Lung-EC_cap : 71.08% ; |
|
Ecotropic murine leukemia virus |
Lung-DC_CD209+ : 80.00% ; |
|
Latino mammarenavirus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 78.79% ; |
|
Oliveros mammarenavirus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 78.79% ; |
|
Canine coronavirus |
Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; Lung-Secretory : 64.36% ; |
|
Feline coronavirus |
Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; Lung-Secretory : 64.36% ; |
|
Human coronavirus 229E |
Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; |
|
Infectious bronchitis virus |
Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; |
|
Porcine epidemic diarrhea virus |
Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; |
|
Transmissible gastroenteritis virus |
Lung-ATII : 77.20% ; Lung-Mac_alv : 70.61% ; Lung-ATII : 69.74% ; Lung-Secretory : 66.29% ; |
|
Murine norovirus |
Lung-Mac_alv : 76.46% ; Lung-Mac_alv : 69.13% ; |
|
Bovine leukemia virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 75.76% ; Lung-Mac_alv : 72.59% ; Lung-Mac_alv : 72.41% ; UrogenitalSinus-ventral mesenchymal pad : 69.39% ; Lung-Secretory : 67.42% ; |
|
Jaagsiekte sheep retrovirus |
Lung-EC_cap : 75.00% ; Lung-EC_cap : 66.27% ; Lung-EC_Vcam1+ : 65.45% ; |
|
Coxsackievirus A9 | ||
Coxsackievirus B1 | ||
West Nile virus |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; |
|
Human parechovirus 1 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; |
|
Human mastadenovirus C |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; |
|
Human gammaherpesvirus 8 |
UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 68.18% ; |
|
Human betaherpesvirus 7 |
Lung-Mo_Ly6c- : 67.99% ; Lung-Mo_Ly6c- : 67.43% ; |
|
Simian immunodeficiency virus |
Lung-Mo_Ly6c- : 67.99% ; Lung-Mo_Ly6c- : 67.43% ; |
|
Human immunodeficiency virus 1 |
Lung-Mo_Ly6c- : 67.99% ; Lung-Mo_Ly6c- : 67.43% ; |
|
Human immunodeficiency virus 2 |
Lung-Mo_Ly6c- : 67.99% ; Lung-Mo_Ly6c- : 67.43% ; |
|
Enterovirus A71 |
TotalBrain-Immune cells : 67.97% ; |
|
Feline endogenous virus RD114 |
Lung-Mac_alv : 66.87% ; |
|
Baboon endogenous virus strain M7 |
Lung-Mac_alv : 66.87% ; |
|
Simian type D retrovirus -Tsukuba |
Lung-Mac_alv : 66.87% ; |
|
Varicella Zoster Virus |
Lung-EC_lymph : 66.67% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 65.15% ; |
|
Human alphaherpesvirus 3 |
Lung-EC_lymph : 66.67% ; UrogenitalSinus-smooth muscle, peri-urethral mesenchyme and urethral epithelium : 65.15% ; |
|
Echovirus E6 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E7 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E11 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E12 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E13 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E20 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E21 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E29 |
Lung-Ciliated : 65.91% ; |
|
Echovirus E33 |
Lung-Ciliated : 65.91% ; |
|
Enterovirus D68 |
Lung-Ciliated : 65.91% ; |
|
Coxsackievirus B3 |
Lung-Ciliated : 65.91% ; |
|
Coxsackievirus B5 |
Lung-Ciliated : 65.91% ; |
|
Human enterovirus 70 |
Lung-Ciliated : 65.91% ; |
|
Encephalomyocarditis virus |
Lung-EC_Vcam1+ : 65.45% ; |
|
Rhinovirus C |
Lung-Ciliated : 65.38% ; |
|
Respiratory syncytial virus |
TotalBrain-Immune cells : 64.71% ; |